The detailed information of tRNA gene sequence


Sequence ID>A179000419
Genome IDCP004145
Search identical group
Phylum/ClassUnclassified
SpeciesFerroplasma acidarmanus Fer1 [CP004145]
Start position on genome 616052
End posion on genome 615911
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
atacgtatca
tRNA gene sequence 
GGAAGCATGGGGTAGTCAGGTATCCTAGAGGGCTCCAGACCCTTAGATCTGGGTTCAAAT
CCCAGTGCTTCCActa
Downstream region at tRNA end position 
cattagggtc
Secondary structure (Cloverleaf model)
>A179000419	Trp	CCA
                   a      Acta cattagggtc
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     A - T          T A
                    T     G A C C C     A
      T G A        G      | | | | |     A
    C       T G G G       C T G G G     C
    A         | | +                 T T
    G       T C C T
      G T A        A     AGAT
                    G + T
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=69 (in A-loop)
TCAGTTTGTGATTAGCTAAAGGTCGTCTGAATTTATGATGAATGACTGGAACGATGAAACATGGAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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