The detailed information of tRNA gene sequence


Sequence ID>A179000424
Genome IDCP005934
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
Start position on genome 1142659
End posion on genome 1142553
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaggggttaa
tRNA gene sequence 
GCCGAGGTAGTCTAGTCCGGTAAGGCGGCGGTCTCGAAAACCGCTGGCGACTCGCCACGG
GAGTTCAAATCTCTCCCTCGGCGCCA
Downstream region at tRNA end position 
ttgttttatt
Secondary structure (Cloverleaf model)
>A179000424	Ser	CGA
                   a      GCCA ttgttttatt
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C T C     A
      T G A        A      | + | | |     A
    C       T C T G       G G G A G     C
    C       | | + |                 T T
    G       A G G C
      G T A        G     TGGCGACTCGCCAC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A *
                    C G A
intron: position=38, length=21 (in A-loop)
TAAGACATTAGTCTCCGAGTC
Intron
Comment/Decision
Genome/Seq. Info.-

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