The detailed information of tRNA gene sequence


Sequence ID>A179000425
Genome IDCP005962
Search identical group
Phylum/ClassEuryarchaeota
SpeciesSalinarchaeum sp. Harcht-Bsk1 [CP005962]
Start position on genome 2490865
End posion on genome 2490968
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
catctaccga
tRNA gene sequence 
AGCCCTGTGGTGTAGCGGCCAATCATAGCGGCCTTTGGAGCCGTTGACGGCGGTTCGAAT
CCGCCCAGGGCTActc
Downstream region at tRNA end position 
ctgcgaacga
Secondary structure (Cloverleaf model)
>A179000425	Gln	TTG
                   a      Actc ctgcgaacga
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     C C G C C     A
      C G A        G      | | | | |     G
    G       T G T G       G G C G G     C
    G         | | +                 T T
    C       T C A T
      C A A        A     TGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T T G
intron: position=38, length=31 (in A-loop)
ACGTGTTCGGTTACGGCCGTGCGCGGAAGCC
Intron
Comment/Decision
Genome/Seq. Info.-

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