The detailed information of tRNA gene sequence


Sequence ID>A179000444
Genome IDCP006670
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus litoralis DSM 5473 [CP006670]
Start position on genome 1854393
End posion on genome 1854286
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atgcggaagt
tRNA gene sequence 
GCCGGGGTGGCTCAGCCTGGTCAGAGCGCCCGGCTCATAACCGGGAGGTCGCGGGTTCAA
AGCCCGCCCCCGGCACCA
Downstream region at tRNA end position 
ttaaaatttt
Secondary structure (Cloverleaf model)
>A179000444	Met	CAT
                   t      ACCA ttaaaatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     C G C C C     A
    C C G A        G      | | | | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
GGGCTGCTCCCCTTCGGGGGAGCCTGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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