The detailed information of tRNA gene sequence


Sequence ID>A179000446
Genome IDCP006867
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus islandicus DSM 13165 [CP006867]
Start position on genome 421270
End posion on genome 421363
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
tgctaacggt
tRNA gene sequence 
GGGCCCGTCGTCTAGCCCGGAAGGACGCCGCCCTTACGAGGCGGTAGTCCGGGGTTCAAA
TCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
ttcctctcca
Secondary structure (Cloverleaf model)
>A179000446	Val	TAC
                   t      ACCA ttcctctcca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    C       T C T G       C G G G G     C
    C       + | | |                 T T
    G       G G A C
      G A A        G     TAGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G *
                    T A C
intron: position=38, length=17 (in A-loop)
AGCTATTGGGCTAGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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