The detailed information of tRNA gene sequence


Sequence ID>A179000458
Genome IDCP006977
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius SUSAZ [CP006977]
Start position on genome 1133836
End posion on genome 1133930
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaataaaatc
tRNA gene sequence 
GCCGCCGTAGCTCAGCCTGGTTAGAGCGCCGGACTCATAATCCGGTTGTCCGGGGTTCAA
ATCCCCGCGGCGGCAtta
Downstream region at tRNA end position 
gagaattttt
Secondary structure (Cloverleaf model)
>A179000458	Met	CAT
                   c      Atta gagaattttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=20 (in A-loop)
CGGTGATATAAATCTGGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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