The detailed information of tRNA gene sequence


Sequence ID>A179000461
Genome IDCP006977
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius SUSAZ [CP006977]
Start position on genome 560694
End posion on genome 560603
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atagctagat
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCTAAGGCGGCGGGCCGCAGACCCGTTATTTTCGCGGGTTCA
AATCCCGCCCCCGGCTtct
Downstream region at tRNA end position 
taaaaaaata
Secondary structure (Cloverleaf model)
>A179000461	Cys	GCA
                   t      Ttct taaaaaaata
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G C G G G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TATTTTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  C       G *
                    G C A
intron: position=38, length=16 (in A-loop)
AGTATAACACGCTGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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