The detailed information of tRNA gene sequence


Sequence ID>A179000523
Genome IDCP009518
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides methylutens MM1 [CP009518]
Start position on genome 2351404
End posion on genome 2351296
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gtgctgcaat
tRNA gene sequence 
GCCCGGATAGCCTAGTTGGTTGGGGCGCCAGACTCATAATCTGGAGGTCGCGTGTTCGAG
TCACGCTCCGGGCActt
Downstream region at tRNA end position 
tgccttttat
Secondary structure (Cloverleaf model)
>A179000523	Met	CAT
                   t      Actt tgccttttat
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T G
                    T     C G C A C     A
      T G A        A      | | | | |     G
    T       T C C G       G C G T G     C
    G       + | | |                 T T
    G       G G G C
      T T G        G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=35 (in A-loop)
GGGACTTTTAACCGAGCGTCCAAATCTCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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