The detailed information of tRNA gene sequence


Sequence ID>A179000542
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1423932
End posion on genome 1423832
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ataactttga
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCCAAGGCGATGGCCTGGAGAGCCATTGCCCGCAAGGGCGCC
CGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position 
cgtctttttg
Secondary structure (Cloverleaf model)
>A179000542	Ser	GGA
                   a      GCCA cgtctttttg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C C A        G     TGCCCGCAAGGGCGC
                    A - T
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=14 (in A-loop)
TTAGCTCCTCGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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