The detailed information of tRNA gene sequence


Sequence ID>A179000556
Genome IDCP010070
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanoplasma termitum MpT1 [CP010070]
Start position on genome 879126
End posion on genome 879022
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
actcaattat
tRNA gene sequence 
GCCGAGCTGGCTCAGCCTGGTGGAGCGTCGGACTCATAATCCGAAGGTCAAGGGTTCGAA
CCCCTTGCTCGGCActc
Downstream region at tRNA end position 
ccactcctct
Secondary structure (Cloverleaf model)
>A179000556	Met	CAT
                   t      Actc ccactcctct
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     C - G          C A
                    T     T T C C C     A
      C G A        G      | | | | |     G
    C       C T C G       A A G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=31 (in A-loop)
GGGTTCTGGTCAACAGACCTCTTCCAGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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