The detailed information of tRNA gene sequence


Sequence ID>A179000596
Genome IDCP011266
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobrevibacter millerae SM9 [CP011266]
Start position on genome 2295925
End posion on genome 2295778
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tgttatgtgt
tRNA gene sequence 
GGGGTTATAGTGTAACCAGGCATCATCTGGGACTCCAGATCCCAGGATCGGGGTTCAAAT
CCCTGTGACCCCAttt
Downstream region at tRNA end position 
ttatactaaa
Secondary structure (Cloverleaf model)
>A179000596	Trp	CCA
                   t      Attt ttatactaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     A - T          T A
                    T     G T C C C     A
      C A A        A      | + | | |     A
    C       T G T G       C G G G G     C
    A         | | +                 T T
    G       T C A T
      G C A        C     GGAT
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=75 (in A-loop)
TTGTCTTTGAAGAAATATACGCGTAACTGAACAGTACTTGTTGTGATGATCAATTGGAGTACTGAGGCAA
GAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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