The detailed information of tRNA gene sequence


Sequence ID>A179000601
Genome IDCP012158
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum sp. WP30 [CP012158]
Start position on genome 1889145
End posion on genome 1889264
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
ggggaagacg
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGCGGTTCGGGTCCGCGTGATCCCGGGTTCAAA
TCCCGGCGGCCCCAtca
Downstream region at tRNA end position 
ctgggctctt
Secondary structure (Cloverleaf model)
>A179000601	Pro	CGG
                   g      Atca ctgggctctt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGATC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  T       T
                  T       G *
                    C G G
intron: position=38, length=46 (in A-loop)
TTGCCACCGTGGGCAACAAGTAAAGCGAGGCCCACGGTCACGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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