The detailed information of tRNA gene sequence


Sequence ID>A179000644
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 2743
End posion on genome 2593
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
gcctttatgc
tRNA gene sequence 
GGGCCCTTAGTTCAGTCTGGCAGAACGTCCCCCTTGCAAGGGGAAGGCCCAGGGTTCAAA
TCCCTGAGGGTCCAtca
Downstream region at tRNA end position 
attcctgttt
Secondary structure (Cloverleaf model)
>A179000644	Ala	TGC
                   c      Atca attcctgttt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     G T C C C     A
      T G A        A      | | | | |     A
    C       C T T G       C A G G G     C
    T       | | | |                 T T
    G       G A A C
      G C A        G     AGGCC
                    T - A
                    C - G
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A *
                    T G C
intron: position=38, length=77 (in A-loop)
GGAGTGGTTACGCTCGATCCATACGCAAAAAGCCATTCACAGAATGGCTTACGGAGAGGCGGAGCCGATT
CCAAGTC
Intron
Comment/Decision
Genome/Seq. Info.-

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