The detailed information of tRNA gene sequence


Sequence ID>A179000655
Genome IDCP014750
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus peptonophilus OG-1 [CP014750]
Start position on genome 229093
End posion on genome 229200
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctcgggaagt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAGAGCGCTCGGCTCATAACCGAGAGGTCCGGGGTTCAA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
ttacaaactt
Secondary structure (Cloverleaf model)
>A179000655	Met	CAT
                   t      ACCA ttacaaactt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       C G G G G     C
  G         + | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
GGGCCGCTCCCCTTCGGGGGAGCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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