The detailed information of tRNA gene sequence


Sequence ID>A179000661
Genome IDCP017006
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus sp. A20 [CP017006]
Start position on genome 702741
End posion on genome 702835
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tataattaat
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCTAAGGGGCTGGCCTTGAGAGCCAGTAGGGTAATCCCTGCG
CGGGTTCGAATCCCGCCCCCGGCGcta
Downstream region at tRNA end position 
ataaaatttt
Secondary structure (Cloverleaf model)
>A179000661	Ser	TGA
                   t      Gcta ataaaatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C T A        G     TAGGGTAATCCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T G A
intron: position=38, length=11 (in A-loop)
AGCGCCAGGTT
Intron
Comment/Decision
Genome/Seq. Info.-

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