The detailed information of tRNA gene sequence


Sequence ID>A179000688
Genome IDCP020477
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus manzaensis YN-25 [CP020477]
Start position on genome 2011240
End posion on genome 2011333
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
agaatagcgt
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTTCTAAGTCGGTGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
cgctcaaaac
Secondary structure (Cloverleaf model)
>A179000688	Arg	TCT
                   t      GCCA cgctcaaaac
                     G - C
                     G - C
                     A   C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G + T
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=16 (in A-loop)
AGGCGAGGCCGGAGCT
Intron
Comment/Decision
Genome/Seq. Info.-

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