The detailed information of tRNA gene sequence


Sequence ID>A179000720
Genome IDLN515531
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanobacterium formicicum [LN515531]
Start position on genome 1089038
End posion on genome 1088885
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttattcgtta
tRNA gene sequence 
GGGGTCATAGTGTAACCTGGCTATCATCTGGGACTCCAGATCCTAGGATCTGGGTTCAAA
TCCCGGTGACCCCAtta
Downstream region at tRNA end position 
actttttttt
Secondary structure (Cloverleaf model)
>A179000720	Trp	CCA
                   a      Atta actttttttt
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     A - T          T A
                    T     G G C C C     A
    C C A A        A      | + | | |     A
  T         T G T G       C T G G G     C
  G           | | +                 T T
  G         T C A T
    C T A          C     GGAT
                    T - A
                    G + T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=80 (in A-loop)
TTGTCTTTGATGAAACGCGCGCTCTGACGTTAGGTATAACCAATCGGATGATGATCGATTGGAGTACTGA
GACAAGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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