The detailed information of tRNA gene sequence


Sequence ID>A179000722
Genome IDLN831302
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium hubeiense JI20-1 [LN831302]
Start position on genome 319157
End posion on genome 319266
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
cggtgtgcga
tRNA gene sequence 
GGGGCCTTAGCTTAGTCTGGTTCAAAGCCCCCGGCTCATAACCGGGTGAGCGGTGGTTCA
AATCCGCCAGGCCCCActt
Downstream region at tRNA end position 
ctctgtaacg
Secondary structure (Cloverleaf model)
>A179000722	Met	CAT
                   a      Actt ctctgtaacg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     C C G C C     A
    C T G A        A      | | + | |     A
  T         T T C G       G G T G G     C
  G         | | | |                 T T
  G         A A G C
    T T C A        C     TGAGC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=34 (in A-loop)
TCGGCGTCCGTCCGCGTGGCGGGTGTCGTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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