The detailed information of tRNA gene sequence


Sequence ID>A172000022
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 578293
End posion on genome 578381
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tacctcaagt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCTCGGCTTGCAACCGAGAGGTCCCCGGGTTCAA
ATCCCGGCCGGTCCActc
Downstream region at tRNA end position 
tttgagttca
Secondary structure (Cloverleaf model)
>A172000022	Ala	TGC
                   t      Actc tttgagttca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTCC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    T G C
intron: position=38, length=14 (in A-loop)
ACCAAGGGCAGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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