The detailed information of tRNA gene sequence


Sequence ID>A175000064
Genome IDCP002408
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera gargensis Ga9.2 [CP002408]
Start position on genome 336050
End posion on genome 336143
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggtggcaata
tRNA gene sequence 
GCCGGGGTAGCTCAGCTTGGTTAGAGCGTACGACTCATAATCGTAAGGTCGCGGGCTCAA
ATCCCGCCTCCGGCACCt
Downstream region at tRNA end position 
tccttcttct
Secondary structure (Cloverleaf model)
>A175000064	Met	CAT
                   a      ACCt tccttcttct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G + T
                     G - C          T A
                    T     C G C C C     A
    T C G A        A      | | | | |     A
  T         C T C G       G C G G G     C
  G         | | | |                 C T
  G         G A G C
    T T A          G     AGGTC
                    T - A
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=17 (in A-loop)
ATCTCATGCAATAAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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