The detailed information of tRNA gene sequence


Sequence ID>A176000147
Genome IDCP011056
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus SARC-C [CP011056]
Start position on genome 1678726
End posion on genome 1678637
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tagcgaaaac
tRNA gene sequence 
GCCGCGGTGGTTTAGCCCGGTCAAGAATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCActa
Downstream region at tRNA end position 
attttatgat
Secondary structure (Cloverleaf model)
>A176000147	Glu	CTC
                   c      Acta attttatgat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T T G       C C G G G     C
  G         + | | +                 T T
  G         G A A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
intron: position=21, length=15 (in D-loop)
AGCGCAGGCACCGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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