The detailed information of tRNA gene sequence


Sequence ID>A177000003
Genome IDCP001140
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus amylolyticus 1221n [CP001140]
Start position on genome 876765
End posion on genome 876676
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
taatgaggaa
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCCGCCCTTACAAGGCGGAGGCCCGGGGTTCAA
GTCCCCGCGGGCCCAttc
Downstream region at tRNA end position 
taactatata
Secondary structure (Cloverleaf model)
>A177000003	Val	TAC
                   a      Attc taactatata
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    T A C
intron: position=38, length=15 (in A-loop)
AGCCCGGTTTGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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