The detailed information of tRNA gene sequence


Sequence ID>A177000013
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1316223
End posion on genome 1316129
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
aacagtattt
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGACGCCGCCCTGACGAGGCGGAGGTCCGGGGTTCAA
ATCCCCGCGGGCCCActt
Downstream region at tRNA end position 
tataaataaa
Secondary structure (Cloverleaf model)
>A177000013	Val	GAC
                   t      Actt tataaataaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C G G G G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G *
                    G A C
intron: position=38, length=20 (in A-loop)
TGTCTGGTATGGGCTTAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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