The detailed information of tRNA gene sequence


Sequence ID>A178000031
Genome IDCP001365
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
Start position on genome 2216967
End posion on genome 2217120
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggaagagtga
tRNA gene sequence 
GGCCGGGTGGCTTAGCTGGACATAGCGCCGCACTCATAATGCGGAGATCGTGGGTTCGGA
GCCCACCCCGGCCAtct
Downstream region at tRNA end position 
tctttccgtc
Secondary structure (Cloverleaf model)
>A178000031	Met	CAT
                   a      Atct tctttccgtc
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          G A
                    T     C A C C C     G
      C G A        G      | | | | |     G
    T       T T C G       G T G G G     C
    G         | | |                 T T
    G       T A G C
      A C A        G     AGATC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=80 (in A-loop)
GGGTTCGGAGATTCGGTGCGGTGACGCCTTGGAAGCGTCCGCGTCCTTCCCGTGGCTCCGCCGAGCCTCG
GACCTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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