The detailed information of tRNA gene sequence


Sequence ID>A179000023
Genome IDCP000968
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Korarchaeum cryptofilum OPF8 [CP000968]
Start position on genome 210707
End posion on genome 210805
Amino Acid Pseudo
Anticodon CCA
Upstream region at tRNA start position 
ctatgatata
tRNA gene sequence 
GGGGTCATGCCCTGGAAAGGTAGGGCGGCGGGCTCCAGACCCGTAAGACGTGGGTTCGAG
TCCCACCGGCCCCACCA
Downstream region at tRNA end position 
ccccatgagg
Secondary structure (Cloverleaf model)
>A179000023	Pseudo	CCA
                   a      ACCA ccccatgagg
                     G - C
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     A   C          T G
                    T     C A C C C     A
      A G G        G      | | | | |     G
    A       T C C C       G T G G G     C
    A       + | |                   T T
    G       G G G C
      G T A        G     AAGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=22 (in A-loop)
TCCCTGGAGCATTGAGGGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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