The detailed information of tRNA gene sequence


Sequence ID>A179000194
Genome IDCP002278
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermus fervidus DSM 2088 [CP002278]
Start position on genome 847046
End posion on genome 847135
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
atactgtgat
tRNA gene sequence 
GGGACCGTGGGGTAGCCAGGTCCATCCTCCCAGCCCGGGGCGCTGGAGACCCGAGTTCAA
ATCTCGGCGGTCCCAtca
Downstream region at tRNA end position 
cattttctcc
Secondary structure (Cloverleaf model)
>A179000194	Pro	GGG
                   t      Atca cattttctcc
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    C C G A        G      | | | | |     A
  A         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     AGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  C       G *
                    G G G
intron: position=38, length=15 (in A-loop)
ATGGACCCACCGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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