The detailed information of tRNA gene sequence


Sequence ID>A179000548
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1152444
End posion on genome 1152336
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
gccttcacga
tRNA gene sequence 
GGGCCCGTAGCGCAGTCAGGAAGCGCGGCGGCCACGCTAGCCGCAGGTCCCGGGTTCGAT
TCCCGGCGGGCCCGctt
Downstream region at tRNA end position 
aacaaaatcc
Secondary structure (Cloverleaf model)
>A179000548	Ala	CGC
                   a      Gctt aacaaaatcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T T
                    T     G G C C C     A
      T G A        A      | | | | |     G
    C       C G C G       C C G G G     C
    A       | | | |                 T T
    G       G C G C
      G A A        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  A       T *
                    C G C
intron: position=38, length=35 (in A-loop)
CCAGGAGCGCCGCAGTCCTAGGCTTTCCCAGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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