The detailed information of tRNA gene sequence


Sequence ID>A17A000354
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1302623
End posion on genome 1302524
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ttttaacagt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCTAAGGGGCTGGCCTGGAGAGCCAGTGCCCCTTCCGGGGCG
CGCGGGTTCGAATCCCGCCCCCGGCGctt
Downstream region at tRNA end position 
aatcaatggt
Secondary structure (Cloverleaf model)
>A17A000354	Ser	GGA
                   t      Gctt aatcaatggt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C T A        G     TGCCCCTTCCGGGGCGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    G G A
intron: position=38, length=14 (in A-loop)
AATATTCCCCGGTC
Intron
Comment/Decision
Genome/Seq. Info.-

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