The detailed information of tRNA gene sequence


Sequence ID>A17A000809
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 1933854
End posion on genome 1933754
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctacacacaa
tRNA gene sequence 
GGGCCCGTAGCTTAGCTAGGTAGAGCGCCCGGCTCATAACCGGGAGGTCCCGGGTTCAAA
TCCCGGCGGGCCCActg
Downstream region at tRNA end position 
gctctatacg
Secondary structure (Cloverleaf model)
>A17A000809	Met	CAT
                   a      Actg gctctatacg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       T T C G       C C G G G     C
    A       + | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
intron: position=30, length=27
TGGGGCCCAGCCCCGCGCCCCGCGTAA
Intron
Comment/Decision
Genome/Seq. Info.-

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