The detailed information of tRNA gene sequence


Sequence ID>A17A000963
Genome IDCP003843
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopumilus sediminis AR2 [CP003843]
Start position on genome 1228755
End posion on genome 1228870
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ataataacat
tRNA gene sequence 
GCCGGGGTAGCTCAGCCTGGTTAGAGTGCCAGTTTCATAATCTGGAGGTCGCGAGTTCGA
AACTCGCCCCCGGCACac
Downstream region at tRNA end position 
acaaattagt
Secondary structure (Cloverleaf model)
>A17A000963	Met	CAT
                   t      ACac acaaattagt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          A A
                    T     C G C T C     A
    C C G A        A      | | | | |     G
  T         C T C G       G C G A G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    T   T
                  T*      A
                  T       A
                    C A T
intron: position=33, length=40 (in A-loop)
AATTTGGTAAACTCTAACGGTTCTCCAACTAAGGCAATAC
Intron
Comment/Decision
Genome/Seq. Info.-

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