The detailed information of tRNA gene sequence


Sequence ID>A17A001008
Genome IDCP004049
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomethylophilus alvi Mx1201 [CP004049]
Start position on genome 1333164
End posion on genome 1332991
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gcacaatact
tRNA gene sequence 
GGGGATTTAGGCTAACCTGGCAGACTAGCGGGCTCCAGACCCGCCTATGGGGGTTCAAAT
CCCTCAGTCCCCACCt
Downstream region at tRNA end position 
accgcatctt
Secondary structure (Cloverleaf model)
>A17A001008	Trp	CCA
                   t      ACCt accgcatctt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T + G
                     T - A          T A
                    T     C T C C C     A
      C A A        A      | + | | |     A
    C       T C G G       G G G G G     C
    T       +   | +                 T T
    G       G A C T
      G C A        A     CTAT
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=99 (in A-loop)
TTATGAGCGTGATTTGATCGAGTATGCTGAAGTTATGATGAATAACTGGAGCGATGACTCATCAATTTCA
TGGGGAGGTAGCTCCTCCCCGTGGTGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK