The detailed information of tRNA gene sequence


Sequence ID>A17A001022
Genome IDCP005934
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
Start position on genome 1408779
End posion on genome 1408889
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
agcttgctaa
tRNA gene sequence 
GCGAGGGTAGCCAAGCCAGGTCAAAGGCGACAGACTCAAGATCTGTTCCGTAGAGGTTCA
GGGGTTCAAATCCCTTCCCTCGCAcca
Downstream region at tRNA end position 
ctgaagaata
Secondary structure (Cloverleaf model)
>A17A001022	Leu	CAA
                   a      Acca ctgaagaata
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      | + | | |     A
  A         A C C G       A G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCGTAGAGGTTC
                    A - T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
intron: position=22, length=27 (in D-loop)
TGGTGAGATTCCTATCTCACCGGCCAA
Intron
Comment/Decision
Genome/Seq. Info.-

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