The detailed information of tRNA gene sequence


Sequence ID>A17A001118
Genome IDCP007026
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopelagicus brevis CN25 [CP007026]
Start position on genome 879625
End posion on genome 879742
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gaaaattcgT
tRNA gene sequence 
GCCGGGGTAGCTCAGCCTGGTTAGAGTGCCAGTTTCATAATCTGGAGGTCGTGGGTTCGA
AACCCACCCCCGGCATta
Downstream region at tRNA end position 
cagtattttt
Secondary structure (Cloverleaf model)
>A17A001118	Met	CAT
                   T      ATta cagtattttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          A A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       G T G G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    T   T
                  T*      A
                  T       A
                    C A T
intron: position=33, length=41 (in A-loop)
CGAATGGTAAACTCTAACGGTTCTTCCATAGAAGGCAATAC
Intron
Comment/Decision
Genome/Seq. Info.-

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