The detailed information of tRNA gene sequence


Sequence ID>A17A001173
Genome IDCP007174
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera evergladensis SR1 [CP007174]
Start position on genome 625760
End posion on genome 625649
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
atatctttgt
tRNA gene sequence 
GGGCTGGTAGTTTAGTCCGGTAGAATACCTGCCTTGCACGTAGGTGGTCGTGGGTTCGAA
TCCCACCCAGTCCActa
Downstream region at tRNA end position 
catcatttat
Secondary structure (Cloverleaf model)
>A17A001173	Ala	TGC
                   t      Acta catcatttat
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        A      | | | | |     G
    C       T T T G       G T G G G     C
    C       + | | +                 T T
    G       G A A T
      G T A        A     TGGTC
                    C - G
                    C - G
                    T - A
                    G + T
                    C - G
                  C       C
                  T       A *
                    T G C
intron: position=38, length=38 (in A-loop)
TGCCATGCATATTCTAATACTCATGCAGGCAGAGGACA
Intron
Comment/Decision
Genome/Seq. Info.-

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