The detailed information of tRNA gene sequence


Sequence ID>A17A000090
Genome IDCP001140
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus amylolyticus 1221n [CP001140]
Start position on genome 1066867
End posion on genome 1066977
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
tatccggact
tRNA gene sequence 
GCCGCCGTAGTATAGCCCGGTCAAGTATGCGGGCCTCTCGGGTGCGGGAGACCCGGGTTC
AAATCCCGGCGGCGGCACtc
Downstream region at tRNA end position 
ctcttattca
Secondary structure (Cloverleaf model)
>A17A000090	Glu	CTC
                   t      ACtc ctcttattca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     GGAGAC
                    C - G
                    G - C
                    G   G
                    G + T
                    C - G
                  C       G
                  T       G *
                    C T C
intron: position=38, length=33 (in A-loop)
AGCCCGTGACACCCTAAGGCCCGTTGAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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