The detailed information of tRNA gene sequence


Sequence ID>A179000003
Genome IDAP011952
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter sp. CaT2 [AP011952]
Start position on genome 21317
End posion on genome 21439
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gacatggtag
tRNA gene sequence 
GGGACCGTAGGGTAGCTTGGTCCATCCTCCCAGCCCGGGGCGCTGGAGACCCGAGTTCAA
ATCTCGGCGGTCCCAtca
Downstream region at tRNA end position 
aaacaatcca
Secondary structure (Cloverleaf model)
>A179000003	Pro	GGG
                   g      Atca aaacaatcca
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C G A G     C
  G           | | +                 T T
  G         T C C T
    T C C A        C     AGAC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C*      C
                  C       G
                    G G G
intron: position=33, length=32 (in A-loop)
ATTGAAGAAGTTTCAGTACTTTTCAACTGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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