The detailed information of tRNA gene sequence


Sequence ID>A179000157
Genome IDCP002051
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus hellenicus DSM 12710 [CP002051]
Start position on genome 1316642
End posion on genome 1316479
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gactgttggt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGTCGGGGGTTCAAA
TCCCCCCGGGCCCAcca
Downstream region at tRNA end position 
tgatctttat
Secondary structure (Cloverleaf model)
>A179000157	Trp	CCA
                   t      Acca tgatctttat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       G
                    C C A
intron: position=31, length=29
ACACCCCTTTATTTAGGGGGGTGGTCGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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