The detailed information of tRNA gene sequence


Sequence ID>A173000013
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 1664444
End posion on genome 1664536
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
ttggtggcaa
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCAcca
Downstream region at tRNA end position 
accttttaaa
Secondary structure (Cloverleaf model)
>A173000013	Ala	CGC
                   a      Acca accttttaaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    C G C
intron: position=30, length=21
AGGGGGTCTGCCCCCGCGTAG
Intron
Comment/Decision
Genome/Seq. Info.-

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