The detailed information of tRNA gene sequence


Sequence ID>C172000188
Genome IDCP021108
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella genomosp. 8 AU19157 [CP021108]
Start position on genome 4277541
End posion on genome 4277635
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tagcgcttcc
tRNA gene sequence 
GGAAGGCATCCGTACCCGGTGGTGCGGCCGGGCTTCAAACCCGGTTGGGGACGTCAGACG
TTCCCACGTAGGTTCGACTCCTGCTGCCTTCCGCCc
Downstream region at tRNA end position 
tccactgccc
Secondary structure (Cloverleaf model)
>C172000188	SeC	TCA
                   c      GCCc tccactgccc
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     C - G
                     A - T          T C
                    T     C G T C C     A
      C C C        C      | + | | |     G
    G       A T G C       G T A G G     C
    G       | + | |                 T T
    T       T G C G
      G G          G     TTGGGGACGTCAGACGTTCCCAC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.-

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