The detailed information of tRNA gene sequence


Sequence ID>C025765
Genome IDAE000520
Search identical group
Phylum/ClassSpirochaetota
SpeciesTreponema pallidum subsp. pallidum str. Nichols [AE000520]
Start position on genome 24944
End posion on genome 24860
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
aagggcgtcc
tRNA gene sequence 
GGAGTGGTGGCCGAGTGGTTGAAGGCGACGGTCTTGAAAACCGCTGTGTCGCAAGGCACC
GGGGGTTCGAATCCCCCCTGCTCCGcgg
Downstream region at tRNA end position 
ggagtattcg
Secondary structure (Cloverleaf model)
>C025765	Ser	TGA
                   c      Gcgg ggagtattcg
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G + T
                     G - C          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G G G G G     C
    G         | | |                 T T
    T       A G G C
      T G A        G     TGTGTCGCAAGGCACC
                    A   C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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