The detailed information of tRNA gene sequence


Sequence ID>CL00005
Genome IDCP000539
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesAcidovorax sp. JS42 [CP000539]
Start position on genome 1516794
End posion on genome 1517110
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aggcaagcca
tRNA gene sequence 
GCCCGAGTGGTGAAATTGGTAGACACAAGGGACTTAAAATCCCTCGACCTCACGGTCATG
CCGGTTCGATTCCGGCCCCGGGCACCa
Downstream region at tRNA end position 
ctcaaaaacc
Secondary structure (Cloverleaf model)
>CL00005	Leu	TAA
                   a      ACCa ctcaaaaacc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A   C
                     G - C          T T
                    T     C G G C C     A
      T A A        G      | | | | |     G
    T       A G T G       G C C G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGACCTCACGGTCAT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=230 (in A-loop)
GAAAAATTTGAGCCCTCCGGAGGAAACTCCGAAGGTGAAGCCCGTCAAATTCGGTGAACGCCCTGGATGT
GCAAACGTCCGAGCCAACGCCGAGCCAAGCCCTGAATCGAAAGGTTCGTGGGAAGGTGTAGAGAGCAGAC
GGCGGGCACCTACGGCCGCAAGGCTATGGTGAAGGCGTGCTCCAGACCACGAACAGCGCTCACGCTGGCG
GCGAAAGTCGAAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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