The detailed information of tRNA gene sequence


Sequence ID>CL00016
Genome IDBX640411
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella pertussis Tohama I [BX640411]
Start position on genome 822793
End posion on genome 823105
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tgcgcgccgT
tRNA gene sequence 
GGAAGGTTGGCAGAGTGGTTGAATGCACCGGTCTTGAAAACCGGCGGGGCTTCACGGCCC
TCGTGAGTTCGAATCTCACACCTTCCGCCA
Downstream region at tRNA end position 
ttcatcgcgg
Secondary structure (Cloverleaf model)
>CL00016	Ser	TGA
                   T      GCCA ttcatcgcgg
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     C A C T C     A
      T G A        G      | | | | |     G
    G       G A C G       G T G A G     C
    G         | | |                 T T
    T       A T G C
      T G A        A     CGGGGCTTCACGGCCCTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T*G A
intron: position=35, length=221 (in A-loop)
GTTCAATCGAGCGCCACGCGGGAAACCGCATGGCTGTAAGGAGTCAAATTCGGCGAAGCCCCTGGCCCTG
TCCGAGGTAACGCCGAGCGAAGGCCACCCCTGCCGGGGCGGCAACGTGTAGAGACTTGACGGCTCCCACC
TAAGGTCGCCCGACTATGGTGAAGGCAAAGTCCAGACCAGCAAACAGACATCGTTCTGGTGGCGAAAGCC
ATAGCGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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