The detailed information of tRNA gene sequence


Sequence ID>CL00030
Genome IDCP000655
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesPolynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
Start position on genome 1762690
End posion on genome 1762352
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgaagtttta
tRNA gene sequence 
GGGCCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCCAGGTTCAAG
TCCTGGTGGGCCCACCA
Downstream region at tRNA end position 
gaaaagcaaa
Secondary structure (Cloverleaf model)
>CL00030	Met	CAT
                   a      ACCA gaaaagcaaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     A - T          T G
                    T     G G T C C     A
      T G A        A      | | | | |     A
    T       C T C G       C C A G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     TGGTC
                    G + T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T *
intron: position=37, length=262 (in A-loop)
AGCGTAAGTTGTGCCTTGCACGTGGAAACTGTGTAAGGGATGGTGTCAAATTCGGAGAAACCTAAAGACG
TTTAAACGAATTGTTGTATTTGCAGTCGAATACACAAATCGTTTTAAACGAATATGGCAACGCCGAGCGA
AGCTTCAATGCGAAAGTATTGTTGAACGTGTAGAGACTAGACGGCACCCATCTAAGTTCAGATGTTAAGT
TTGAATATGATGAAGGCATAGTCCAGGGAGTAGTGAAAGCTACACAAACCGG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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