The detailed information of tRNA gene sequence


Sequence ID>CL00031
Genome IDCP000133
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRhizobium etli CFN 42 [CP000133]
Start position on genome 1844759
End posion on genome 1844472
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gaggtcccac
tRNA gene sequence 
GCGGACGTGGTGGAATCGGTAGACACAAGGGACTTAAAATCCCTCGGCCTAGGCTATGCG
GGTTCGACCCCCGCCGTCCGCACCA
Downstream region at tRNA end position 
tatgtcgata
Secondary structure (Cloverleaf model)
>CL00031	Leu	TAA
                   c      ACCA tatgtcgata
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     C - G
                     G - C          C C
                    T     C G C C C     A
      T A A        G      | | | | |     G
    C       G G T G       G C G G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGGCCTAGGCTAT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=203 (in A-loop)
AAAGAAAAATTGAGTGCACGGGCGGAAACGCCTGATGTAGAACTGCTCAAAGTCGGGGAAACCTGTCAGA
TGGCAATCCCGAGCCAAGCCCCTCAGGGGAAGGTGTAGAGACTAGACGGGCAGCACCTAAGGCGGAAGCT
AGGGTGAAGGTATAGTCCAGACCACAAACGCCGGAAGGCGGCGGCGAAAGCCGTAGCGGTATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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