The detailed information of tRNA gene sequence


Sequence ID>CL00032
Genome IDAP008231
Search identical group
Phylum/ClassCyanobacteriota
SpeciesSynechococcus elongatus PCC 6301 [AP008231]
Start position on genome 1217229
End posion on genome 1216903
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaagcaacaa
tRNA gene sequence 
GGGGGCGTGGCGGAACGGTAGACGCAGCGGACTTAAAATCCGCTGACTGTAAAGGTCGTG
AGGGTTCGAGTCCCTCCGCCCCCATTG
Downstream region at tRNA end position 
acaaacgacc
Secondary structure (Cloverleaf model)
>CL00032	Leu	TAA
                   a      ATTG acaaacgacc
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C T C C C     A
      C A A        G      | | | | |     G
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          A     TGACTGTAAAGGTCGT
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=240 (in A-loop)
AGAAAACTGGGCCTCGATCGCGAAAGGGATCGAGTGGCAGCTCTCAAACTCAGGGAAACCTAAAACTTTA
AACATTAAAGTCATGGCAATCCTGAGCCAAGCTAAAGCTAAACAACTAACAGCTTTAGAAGGTGCAGAGA
CTAGACGGGAGCTACCCTAACGGATTCAGCCGAGGGTAAAGGGATAGTCCAATTCTCAACATCGCGATTG
TTGATGGCAGCGAAAGTTGCAGAGAGAATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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