The detailed information of tRNA gene sequence


Sequence ID>CL00034
Genome IDCP000159
Search identical group
Phylum/ClassRhodothermota
SpeciesSalinibacter ruber DSM 13855 [CP000159]
Start position on genome 1765477
End posion on genome 1765761
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gctccaaatT
tRNA gene sequence 
GCCGGGGTGGCGGAATTGGTAGACGCAACGGACTTAAAATCCGTTGGGCCTTGTGGCCCG
TGTGGGTTCGAGTCCCACCCCCGGTACCG
Downstream region at tRNA end position 
cgtttgcttc
Secondary structure (Cloverleaf model)
>CL00034	Leu	TAA
                   T      ACCG cgtttgcttc
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C A C C C     A
      T A A        G      | | | | |     G
    T       G G C G       G T G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     TGGGCCTTGTGGCCCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=194 (in A-loop)
AGACAAATGAGTGCTGGGGCGGAAACGCCTCACGTAGATCTGCTCAAAGTCAGGGAAGCCTTTTGACTGG
TAATCCTGAGCCAAGCCCGACTTTGGGAAGGTGCAGAGACTTGACGGGCAGCACCTACGTCCGGCCGGAT
ACGGTGAAGAGAAAGTCCAGACCACGCCCCACCAATGAAAATTGGAGTGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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