The detailed information of tRNA gene sequence


Sequence ID>CL00035
Genome IDCP000699
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRhizorhabdus wittichii RW1 [CP000699]
Start position on genome 2678725
End posion on genome 2678385
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ctgcgacgcT
tRNA gene sequence 
GCGGGCGTGGCGAAACTGGTAGACGCAACGGACTTAAAATCCGTAAGGTCGCGAGACCTG
TGGGGGTTCGATTCCCCCCGCCCGCACCA
Downstream region at tRNA end position 
Ccgttgcttc
Secondary structure (Cloverleaf model)
>CL00035	Leu	TAA
                   T      ACCA Ccgttgcttc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T T
                    T     C C C C C     A
      C A A        G      | | | | |     G
    T       A G C G       G G G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     AAGGTCGCGAGACCTGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=250 (in A-loop)
GAACCTATGTCGAGTGCCCGTCGGGAAACCGACGGTGCAGAACTGCTCAAATTCGGGGAAGCCTGTTTCC
TGGTGATCCCGAGCCAAGCCGCCGGTCCTCAGCGACCGCGGAAGGTGTAGAGACTAGACGGGCAGCGCCT
ACGTCCGCCCCCTCCTTCTGAAGGCGGCGGATAGGGCGAAGGGATAGTCCAGACCACGAACGGCACCGGC
CCGCGCGGCCCGGACCGGCGGCGAAAGCCGAAGTGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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