The detailed information of tRNA gene sequence


Sequence ID>CL00050
Genome IDBA000022
Search identical group
Phylum/ClassCyanobacteriota
SpeciesSynechocystis sp. PCC 6803 [BA000022]
Start position on genome 2791019
End posion on genome 2791748
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttcgaagcgA
tRNA gene sequence 
CGCGGGATAGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGTGGTTCAAA
TCCGCCTCCCGCCttaa
Downstream region at tRNA end position 
aaaaaaagaa
Secondary structure (Cloverleaf model)
>CL00050	Met	CAT
                   A      ttaa aaaaaaagaa
                     C   C
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C C G C C     A
      T G A        A      | | + | |     A
    C       C G A G       G G T G G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T*      A
                    C A T
intron: position=34, length=655 (in A-loop)
CAGGTCGCAAGATGTAAACCATGAGCACTAAGCTTAAGGGTGACATTGCAGAGCAAGCCGCCATTCTTCG
TGCATTGAAGCTTGGTTGGGGGGTTCTGAAGCCATTGGGAGACCGTCTTTCTTACGATTTGGTCTTTGAT
GTCGAAGGGATCCTTCTGAAGGTGCAGGTTAAAAGCTCCTGGTTCAGCGAAAAGACTGGCAACTATGTTG
TTGACAATCGCAGAACAAGGACAAACAGAAGAAACATTGTTAGATCTCCTTATCGTGGGAATGACTTTGA
TTTTGCTGTTGCCTACGTCGAAGAACTTGAGCTGTTTTACGTCTTCCCGGTTGATGTCTTTATCAGTTAC
GGCAGTGAAATTCACCTGGTCGAAACTGATAAGCGTCAGAGAAAACCAAGGTCATTCGGTTACCGAGAGG
CTTGGCATCTCATCTTGCAAAAAGGGGCTGCGCAAAAGGAAACTTCTGCGTGATTATCTCTCAAATTCGG
GGAAGCCTTTCAAATGGTAATCCCGAGCCAAACCTAGGAATGCTTGGTGTTTCTGGGAAGGTGTAGAGAC
TTAATGGGAGACACCCTAACAGAAAAGCTGAGGGTGAAGAGAAAGTCCAGACCACAAACTGACAGAGTCA
GGCAGTGAAAACTGTAGTTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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