The detailed information of tRNA gene sequence


Sequence ID>w028062
Genome IDABCS01000024
Search identical group
Phylum/ClassMyxococcota
SpeciesPlesiocystis pacifica SIR-1 [ABCS]
Start position on genome 17146
End posion on genome 17221
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
actcgaattc
tRNA gene sequence 
CGACCTCTAGCTCATTCGGAAGAGCGCTGCTTTCACACGGCGGAGGTGCCCGGTTCGAAC
CCGGGGAGGTCGACTC
Downstream region at tRNA end position 
gaccgcggaa
Secondary structure (Cloverleaf model)
>w028062	Val	CAC
                   c      ACTC gaccgcggaa
                     C - G
                     G - C
                     A - T
                     C - G
                     C - G
                     T - A
                     C - G          C A
                    T     G G G C C     A
      T T A        A      | | | | |     G
    C       C T C G       C C C G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGTG
                    C - G
                    T + G
                    G - C
                    C - G
                    T + G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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