The detailed information of tRNA gene sequence


Sequence ID>w020870
Genome IDAAVE01000005
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesDinoroseobacter shibae DFL 12 [AAVE]
Start position on genome 63937
End posion on genome 63846
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gacccttcgC
tRNA gene sequence 
GGAGAGGTGCCGGAGTGGTCGAACGGGGCGGTCTCGAAAACCGTTGTGGGTGCAAGCCCA
CCCAGGGTTCGAATCCCTGTCTCTCCGCCA
Downstream region at tRNA end position 
Ttttcatata
Secondary structure (Cloverleaf model)
>w020870	Ser	CGA
                   C      GCCA Ttttcatata
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     G T C C C     A
      T G A        G      | | | | |     G
    G       G G C C       C A G G G     C
    G         | | |                 T T
    T       A C G G
      C G A        G     TGTGGGTGCAAGCCCACC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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